bhive
latest
Overview
1. Overview
Installation
1. Installation
Change log
1. bhive Release history
Test Dataset
1. Testing dataset
Usage Information
1. BC_edit_matrix.py
2. cell_calling.py
3. map_stat.py
4. seq_logo.py
5. seq_qual.py
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Reference
Reference
bhive
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Overview
1. Overview
Installation
1. Installation
1.1. Prerequisites
1.2. R libraries required
1.3. Python packages required
1.4. Install bhive
1.5. Upgrade bhive
Change log
1. bhive Release history
1.1. Version 1.0.0
Test Dataset
1. Testing dataset
1.1. Download raw data
1.2. Convert BAM to FASTQ
1.3. Run CellRanger
count
workflow
1.4. Run CellRanger
aggr
workflow
1.5. References
Usage Information
1. BC_edit_matrix.py
1.1. Description
1.2. Options
1.3. Input file format
1.4. Example (Visualize sample barcode)
1.5. out put files
2. cell_calling.py
2.1. Description
2.2. Example
2.3. Output files
3. map_stat.py
3.1. Description
3.2. Example
4. seq_logo.py
4.1. Description
4.2. Options
4.3. Input file format
4.4. Example (Visualize sample barcode)
4.5. Example (Visualize cell barcode and UMI)
5. seq_qual.py
5.1. Description
5.2. Options
5.3. Example
5.4. Output files
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LICENSE
Reference
Reference
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